Section - 11 References

11.1 Document Format

The bookdown package (Xie 2021) was used to produce this document, which was built on top of R Markdown (Xie, Allaire, and Grolemund 2018) and knitr (Xie 2020).

11.2 Open Review Toolkit

Thanks to Ben Marwick for outlining how to use the Open Review Toolkit in bookdown to collect feedback on the document: https://benmarwick.github.io/bookdown-ort/mods.html#open-review-block

11.6 Additional Contributors

A big thank you to anyone who has left feedback to improve this document:

11.7 R Packages Used

Arnold, Jeffrey B. 2019. Ggthemes: Extra Themes, Scales and Geoms for Ggplot2. http://github.com/jrnold/ggthemes.

Eddelbuettel, Dirk. 2020. Anytime: Anything to Posixct or Date Converter. http://dirk.eddelbuettel.com/code/anytime.html.

Freedman, Leonard P., Iain M. Cockburn, and Timothy S. Simcoe. 2015. “The Economics of Reproducibility in Preclinical Research.” PLOS Biology 13 (6): e1002165. https://doi.org/10.1371/journal.pbio.1002165.

Kassambara, Alboukadel. 2020. Ggpubr: Ggplot2 Based Publication Ready Plots. https://rpkgs.datanovia.com/ggpubr/.

Kothari, Aditya. 2018. GgTimeSeries: Time Series Visualisations Using the Grammar of Graphics. https://github.com/Ather-Energy/ggTimeSeries.

Luraschi, Javier. 2020. Pins: Pin, Discover and Share Resources. https://github.com/rstudio/pins.

Morgan-Wall, Tyler. 2020. Rayshader: Create Maps and Visualize Data in 2D and 3D. https://github.com/tylermorganwall/rayshader.

Pedersen, Thomas Lin. 2020. Ggforce: Accelerating Ggplot2. https://CRAN.R-project.org/package=ggforce.

Pedersen, Thomas Lin, and David Robinson. 2020. Gganimate: A Grammar of Animated Graphics. https://CRAN.R-project.org/package=gganimate.

Ren, Kun, and Kenton Russell. 2016. Formattable: Create Formattable Data Structures. https://CRAN.R-project.org/package=formattable.

Rinker, Tyler, and Dason Kurkiewicz. 2019. Pacman: Package Management Tool. https://github.com/trinker/pacman.

Sievert, Carson, Chris Parmer, Toby Hocking, Scott Chamberlain, Karthik Ram, Marianne Corvellec, and Pedro Despouy. 2020. Plotly: Create Interactive Web Graphics via Plotly.js. https://CRAN.R-project.org/package=plotly.

Wang, Earo, Di Cook, Rob Hyndman, and Mitchell O’Hara-Wild. 2020. Tsibble: Tidy Temporal Data Frames and Tools. https://tsibble.tidyverts.org.

Waring, Elin, Michael Quinn, Amelia McNamara, Eduardo Arino de la Rubia, Hao Zhu, and Shannon Ellis. 2020. Skimr: Compact and Flexible Summaries of Data. https://CRAN.R-project.org/package=skimr.

Wickham, Hadley, Winston Chang, Lionel Henry, Thomas Lin Pedersen, Kohske Takahashi, Claus Wilke, Kara Woo, Hiroaki Yutani, and Dewey Dunnington. 2020. Ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics. https://CRAN.R-project.org/package=ggplot2.

Wickham, Hadley, Romain François, Lionel Henry, and Kirill Müller. 2020. Dplyr: A Grammar of Data Manipulation. https://CRAN.R-project.org/package=dplyr.

Wickham, Hadley, and Garrett Grolemund. 2017. R for Data Science: Import, Tidy, Transform, Visualize, and Model Data. 1st ed. O’Reilly Media, Inc.

Xie, Yihui. 2020. Knitr: A General-Purpose Package for Dynamic Report Generation in R. https://yihui.org/knitr/.

———. 2021. Bookdown: Authoring Books and Technical Documents with R Markdown. https://CRAN.R-project.org/package=bookdown.

Xie, Yihui, J. J. Allaire, and Garrett Grolemund. 2018. R Markdown: The Definitive Guide. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown.

References

Xie, Yihui. 2020. Knitr: A General-Purpose Package for Dynamic Report Generation in R. https://yihui.org/knitr/.

Xie, Yihui. 2021. Bookdown: Authoring Books and Technical Documents with R Markdown. https://CRAN.R-project.org/package=bookdown.

Xie, Yihui, J. J. Allaire, and Garrett Grolemund. 2018. R Markdown: The Definitive Guide. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown.